PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.35607s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 199aa    MW: 22979.8 Da    PI: 6.2194
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.35607s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.91e-55531571102
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlr+w+h+eenkrrtl+k+diaaa++rt
  Araha.35607s0003.1.p  53 QLQMFWANQmqeIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRT 141
                           89******9888899************************************************************************** PP

                 NF-YC  87 difdflvdivprdelk 102
                           d+fdflvdi+prde+k
  Araha.35607s0003.1.p 142 DVFDFLVDIIPRDEVK 157
                           *************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3632147IPR009072Histone-fold
PfamPF008084.6E-2275138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.8E-3876153IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEPSEEGQQQ QGMMDYVPPH AYQSGPANAA SHMAFQQAHH FHHHHHQQQQ QQQLQMFWAN  60
QMQEIEHTTD FKNHTLPLAR IKKIMKADED VRMISAEAPV IFAKACEMFI LELTLRAWIH  120
TEENKRRTLQ KNDIAAAISR TDVFDFLVDI IPRDEVKEEG LGVTKGTIPS AVGSPPYYYM  180
QQQGMMQHWP QEQHHDDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C3e-4362153194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B3e-4362153194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0098940.0AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence.
GenBankAC0691590.0AC069159.8 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete sequence.
GenBankAY0724110.0AY072411.1 Arabidopsis thaliana transcription factor, putative (At1g56170) mRNA, complete cds.
GenBankAY1147040.0AY114704.1 Arabidopsis thaliana putative transcription factor (At1g56170) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891878.11e-125hypothetical protein ARALYDRAFT_474686
SwissprotQ8LCG71e-116NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLD7KNW71e-125D7KNW7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__4640__AT1G56170.21e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-93nuclear factor Y, subunit C2